ArXiv TLDR

Bryan Cheng

2 papers · Latest:

Genomics

ECLIPSE: A Composable Pipeline for Predicting ecDNA Formation, Evolution, and Therapeutic Vulnerabilities in Cancer

ECLIPSE is a robust computational framework for predicting ecDNA formation, evolution, and therapeutic vulnerabilities in cancer, addressing prior methodological flaws.

2604.06569
Genomics

The Mechanistic Invariance Test: Genomic Language Models Fail to Learn Positional Regulatory Logic

Genomic language models fail to learn positional gene regulation, instead relying on statistical shortcuts like AT content, despite high performance.

2604.06549

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