Physics-Informed Neural Networks for Biological $2\mathrm{D}{+}t$ Reaction-Diffusion Systems
William Lavery, Jodie A. Cochrane, Christian Olesen, Dagim S. Tadele, John T. Nardini + 1 more
TLDR
This paper extends Biologically-Informed Neural Networks (BINNs) to 2D+t reaction-diffusion systems for discovering governing equations from biological data.
Key contributions
- Extends Biologically-Informed Neural Networks (BINNs) to 2D+t reaction-diffusion systems.
- Combines data preprocessing, BINN-based learning, and symbolic regression for equation discovery.
- Recovers 2D+t reaction-diffusion models for lung cancer cell dynamics from microscopy data.
- Provides a practical and interpretable tool for fast analytic equation discovery from spatio-temporal data.
Why it matters
This framework significantly advances identifying complex biological governing equations from experimental data. It extends beyond 1D+t limitations, offering a powerful tool for understanding spatio-temporal systems and enabling faster, interpretable discovery of analytic models.
Original Abstract
Physics-informed neural networks (PINNs) provide a powerful framework for learning governing equations of dynamical systems from data. Biologically-informed neural networks (BINNs) are a variant of PINNs that preserve the known differential operator structure (e.g., reaction-diffusion) while learning constitutive terms via trainable neural subnetworks, enforced through soft residual penalties. Existing BINN studies are limited to $1\mathrm{D}{+}t$ reaction-diffusion systems and focus on forward prediction, using the governing partial differential equation as a regulariser rather than an explicit identification target. Here, we extend BINNs to $2\mathrm{D}{+}t$ systems within a PINN framework that combines data preprocessing, BINN-based equation learning, and symbolic regression post-processing for closed-form equation discovery. We demonstrate the framework's real-world applicability by learning the governing equations of lung cancer cell population dynamics from time-lapse microscopy data, recovering $2\mathrm{D}{+}t$ reaction-diffusion models from experimental observations. The proposed framework is readily applicable to other spatio-temporal systems, providing a practical and interpretable tool for fast analytic equation discovery from data.
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